Takahashi, Tetsumi & K. Nakaya. 1997. "A taxonomic review of Xenotilapia sima and X. boulengeri (Cichlidae: Perciformes) from lake Tanganyika". Ichthyological Research. 44(4):335-346. DOI: 10.1007/BF02671985 (crc03279) (résumé)
Takahashi, Tetsumi & Y. Yanagisawa, K. Nakaya. 1997. "Microdontochromis rotundiventralis, a new cichlid fish (Perciformes: Cichlidae) from Lake Tanganyika". Ichthyological Research. 44:2:109-117 (crc00966) (résumé)
Takahashi, Tetsumi & K. Nakaya. 1998. "Callochromis stappersii (Boulenger, 1914) from Lake Tanganyika, a junior synonym of C. pleurospilus (Boulenger, 1906) (Perciformes, Cichlidae)". Ichthyological Research. 45:4:413-418 (crc01143)
Takahashi, Tetsumi & Nakaya, K. 1999. "New species of Haplotaxodon (Perciformes: Cichlidae) from Lake Tanganyika, Africa". Copeia. 1999:1:101-106 (crc01375) (résumé)
Takahashi, Tetsumi. 2001. "Description of the Ethmovomerine Region in Tanganyikan Cichlid Fishes. Teleostei: Perciformes". Bulletin of Fisheries Sciences, Hokkaido University. 52(3):117-124. DOI: 02A0469538 (crc04058) (résumé)
Takahashi, Tetsumi & K. Nakaya. 2002. "Description and familial allocation of the African fluvial genus Teleogramma to the Cichlidae". Ichthyological Research. 49(2):171-180 (crc04623) (résumé)
Takahashi, Tetsumi. 2002. "Systematics of the tribe Trematocarini (Perciformes: Cichlidae) from Lake Tanganyika, Africa". Ichthyological Research. 49(3):253-259 (crc01735) (résumé)
Takahashi, Tetsumi. 2003. "Comparative Osteology of the Infraorbitals in Cichlid Fishes (Osteichthyes: Teleostei: Perciformes) from Lake Tanganyika". Species diversity. 8(1):1-26 (crc04057) (résumé)
Takahashi, Tetsumi & K. Nakaya. 2003. "New species of Cyphotilapia (Perciformes: Cichlidae) from Lake Tanganyika, Africa". Copeia. 2003(4):824-834. DOI: 10.1643/IA03-148.1 (crc00003) (résumé)
Takahashi, Tetsumi. 2003. "Systematics of Xenotilapia Boulenger, 1899 (Perciformes: Cichlidae) from Lake Tanganyika, Africa". Ichthyological Research. 50(1):36-47. DOI: 10.1007/s102280300005 (crc01119) (résumé)
Takahashi, Tetsumi. 2004. "Morphological and genetic distinctness of rock and shell-bed dwelling Telmatochromis(Teleostei, Cichlidae) in the south of Lake Tanganyika suggest the existence of two species". Journal of Fish Biology. 65(2):419-435. DOI: 10.1111/j.0022-1112.2004.00459 (crc02576) (résumé)
Takahashi, Tetsumi. 2004. "Phylogenetic analysis of Cyprichromini (Perciformes: Cichlidae) endemic to Lake Tanganyika and validation of the genus Paracyprichromis". Ichthyological Research. 51(1):1-4. DOI: 10.1007/s10228-003-0183-5 (crc04010) (résumé)
Takahashi, Tetsumi & M. Hori. 2006. "Description of a new Lake Tanganyika cichlid fish of the genus Cyprichromis (Perciformes: Cichlidae) with a note on sexual dimorphism". Journal of Fish Biology. 68(SB):174-192. DOI: 10.1111/j.0022-1112.2006.001055.x (crc01298) (résumé)
Takahashi, Tetsumi & Benjamin Ngatunga, Jos Snoeks. 2006. "Taxonomic status of the six-band morph of Cyphotilapia frontosa (Perciformes: Cichlidae) from Lake Tanganyika, Africa". Ichthyological Research. (2007)54:55–60 (crc01811) (résumé)
Takahashi, Tetsumi & J. Snoeks, K. Nakaya. 2006. "Trematochromis schreyeni Poll, 1987, a junior synonym of 'Ctenochromis' benthicola (Matthes, 1962) (Perciformes: Cichlidae) from Lake Tanganyika". Journal of Fish Biology. 68(sulA):56-67 (crc01490) (résumé)
Takahashi, Tetsumi. 2008. "Description of a new cichlid fish species of the genus Benthochromis (Perciformes: Cichlidae) from Lake Tanganyika". Journal of Fish Biology. 72(3)603–613 (crc01522) (résumé)
Takahashi, Tetsumi & M. Hori. 2008. "Evidence of disassortative mating in a Tanganyikan cichlid fish and its role in the maintenance of intrapopulation dimorphism". Biology Letters. 4(5):497-499. DOI: 10.1098/rsbl.2008.0244 (crc04062) (résumé)
Takahashi, Tetsumi & K. Watanabe, H. Munehara, L. Rüber, M. Hori. 2009. "Evidence for divergent natural selection of a Lake Tanganyika cichlid inferred from repeated radiations in body size". Molecular ecology. 18(14):3110-3119 (crc04063) (résumé)
Takahashi, Tetsumi. 2010. "Different degrees of lunar synchronization of ovary development between two morphs of a Tanganyikan cichlid fish". Hydrobiologia. 644(1):139-143. DOI: 10.1007/s10750-010-0103-4 (crc04059) (résumé)
Takahashi, Tetsumi & H. Ochi, M. Kohda, M. Hori. 2011. "Invisible pair bonds detected by molecular analyses". Biology Letters. 8 (3):355–357. DOI: 10.1098/rsbl.2011.1006 (crc04085) (résumé)
Takahashi, Tetsumi & S. Koblmüller. 2011. "The adaptive radiation of cichlid fish in Lake Tanganyika: a morphological perspective". International Journal of Evolutionary Biology. 2011(620754):1-14. DOI: 10.4061/2011/620754 (crc03571) (résumé)
Takahashi, Tetsumi & M. Hori. 2012. "Genetic and morphological evidence implies existence of two sympatric species in Cyathopharynx furcifer (Teleostei: Cichlidae) from Lake Tanganyika". International Journal of Evolutionary Biology. 2012(980879):1-7. DOI: 10.1155/2012/980879 (crc04576) (résumé)
Takahashi, Tetsumi & K. Ota, M. Kohda, M. Hori. 2012. "Some evidence for different ecological pressures that constrain male and female body size". Hydrobiologia. 684(1):35-44. DOI: 10.1007/s10750-011-0961-4 (crc06395) (résumé)
Takahashi, Tetsumi & T. Sota, M. Hori. 2013. "Genetic basis of male colour dimorphism in a Lake Tanganyika cichlid fish". Molecular ecology. 22(11):3049–3060. DOI: 10.1111/mec.12120 (crc05210) (résumé)
Takahashi, Tetsumi & S. Koblmüller. 2014. "A new species of Petrochromis (Perciformes: Cichlidae) from Lake Tanganyika". Ichthyological Research. 61(3):252-264. DOI: 10.1007/s10228-014-0396-9 (crc06101) (résumé)
Takahashi, Tetsumi. 2014. "Greenwoodochromini Takahashi from Lake Tanganyika is a junior synonym of Limnochromini Poll (Perciformes: Cichlidae)". Journal of Fish Biology. 84(4):929-936. DOI: 10.1111/jfb.12309 (crc06051) (résumé)
Takahashi, Tetsumi & T. Sota. 2016. "A robust phylogeny among major lineages of the East African cichlids". Molecular Phylogenetics and Evolution. 100:234-242. DOI: 10.1016/j.ympev.2016.04.012 (crc07404) (résumé)
Takahashi, Tetsumi & K. Ota. 2016. "Body size evolution of a shell-brooding cichlid fish from Lake Tanganyika". Journal of Evolutionary Biology. epub. DOI: 10.1111/jeb.12961 (crc07439) (résumé)
Takahashi, Tetsumi. 2018. "Colour variation of a shell-brooding cichlid fish from Lake Tanganyika". Hydrobiologia. (epub):1-8. DOI: 10.1007/s10750-018-3717-6 (crc09188) (résumé)
Takahashi, Tetsumi. 2018. "Function of nuchal humps of a cichlid fish from Lake Tanganyika: inferences from morphological data". Ichthyological Research. 65(3):316–323. DOI: 10.1007/s10228-018-0614-y (crc09187) (résumé)
Takahashi, Tetsumi. 2020. "A new morph of Telmatochromis temporalis (Cichlidae; Cichliformes) from Lake Tanganyika". Hydrobiologia. DOI: 10.1007/s10750-020-04433-5 (crc11094) (résumé)
Takahashi, Tetsumi & S. Koblmüller. 2020. "Brood parasitism of an open-water spawning cichlid by the cuckoo catfish". Journal of Fish Biology. epub. DOI: 10.1111/jfb.14350 (crc09709) (résumé)
Takahashi, Tetsumi. 2021. "A new linkage group involved in sex determination in haplotilapiine cichlids". Journal of Fish Biology (crc11486) (résumé)
Takahashi, Tetsumi & A.J. Nagano, T. Sota. 2021. "Mapping of quantitative trait loci underlying a magic trait in ongoing ecological speciation". BMC Genomics. 22(615):1-9. DOI: 10.1186/s12864-021-07908-4 (crc11470) (résumé)
Takahashi, Tetsumi. 2022. "Offspring mortality during mouthbrooding in two open‑water spawning cichlids from Lake Tanganyika". Hydrobiologia. 850:2385–2392. DOI: 10.1007/s10750-022-05023-3 (crc12538) (résumé)