Koblmüller, Stephan & W. Salzburger, C. Sturmbauer. 2004. "Evolutionary relationships in the sand-dwelling cichlid lineage of Lake Tanganyika suggest multiple colonization of rocky habitats and convergent origin of bipartental mouthbrooding". Journal of Molecular Evolution. 58(1):79-96. DOI: 10.1007/s00239-003-2527-1 (crc01117) (resumen)
Koblmüller, Stephan & Nina Duftner, Cyprian Katongo, Harris Phiri, Christian Sturmbauer. 2005. "Ancient Divergence in Bathypelagic Lake Tanganyika Deepwater Cichlids: Mitochondrial Phylogeny of the Tribe Bathybatini". Jounal of Molecular Evolution. no60:297-314 (crc01282)
Koblmüller, Stephan & B. Egger, C. Sturmbauer, K.M. Sefc. 2007. "Evolutionary history of Lake Tanganyika's scale-eating cichlid fishes". Molecular Phylogenetics and Evolution. 44(3):1295-1305. DOI: 10.1016/j.ympev.2007.02.010 (crc03710) (resumen)
Koblmüller, Stephan & K.M. Sefc, N. Duftner, M. Warum, C. Sturmbauer. 2007. "Genetic population structure as indirect measure of dispersal ability in a Lake Tanganyika cichlid". Genetica. 130(2):121-131. DOI: 10.1007/s10709-006-0027-0 (crc02625) (resumen)
Koblmüller, Stephan & N. Duftner, K.M. Sefc, M. Aibara, M. Stipacek, M. Blanc, B. Egger, C. Sturmbauer. 2007. "Reticulate phylogeny of gastropod-shell-breeding cichlids from Lake Tanganyika – the result of repeated introgressive hybridization". BMC Evolutionary Biology. 7:7:1-13. DOI: 10.1186/1471-2148-7-7 (crc01398) (resumen)
Koblmüller, Stephan & K.M. Sefc, N. Duftner, C. Katongo, T. Tomljanovic, C. Sturmbauer. 2008. "A single mitochondrial haplotype and nuclear genetic differentiation in sympatric colour morphs of a riverine cichlid fish". Journal of Evolutionary Biology. 21(1):362–367. DOI: 10.1111/j.1420-9101.2007.01443.x (crc05481) (resumen)
Koblmüller, Stephan & Ulrich K. Schliewen, Nina Duftner, Kristina M. Sefc, Cyprian Katongo, Christian Sturmbauer. 2008. "Age and spread of the haplochromine cichlid fishes in Africa". Molecular Phylogenetics and Evolution. 49:153-169 (crc01742) (resumen)
Koblmüller, Stephan & K.M. Sefc, C. Sturmbauer. 2008. "The Lake Tanganyika cichlid species assemblage: recent advances in molecular phylogenetics". Hydrobiologia. 615(1):5-20. DOI: 10.1007/s10750-008-9552-4 (crc02715) (resumen)
Koblmüller, Stephan & N. Duftner, K.M. Sefc, U. Aigner, M. Rogetzer, C. Sturmbauer. 2009. "Phylogeographic structure and gene flow in the scale-eating cichlid Perissodus microlepis (Teleostei, Perciformes, Cichlidae) in southern Lake Tanganyika". Zoologica Scripta. 38(3):257-268. DOI: 10.1111/j.1463-6409.2008.00378.x (crc03916) (resumen)
Koblmüller, Stephan & B. Egger, C. Sturmbauer, K.M. Sefc. 2010. "Rapid radiation, ancient incomplete lineage sorting and ancient hybridization in the endemic Lake Tanganyika cichlid tribe Tropheini". Molecular Phylogenetics and Evolution. 55(1):318-334. DOI: 10.1016/j.ympev.2009.09.032 (crc03917) (resumen)
Koblmüller, Stephan & W. Salzburger, B. Obermüller, E. Eigner, C. Sturmbauer, K.M. Sefc. 2011. "Separated by sand, fused by dropping water: habitat barriers and fluctuating water levels steer the evolution of rock-dwelling cichlid populations in Lake Tanganyika". Molecular ecology. 20(11):2272-2290. DOI: 10.1111/j.1365-294X.2011.05088.x (crc03711) (resumen)
Koblmüller, Stephan & C. Katongo, H. Phiri, C. Sturmbauer. 2012. "Past connection of the upper reaches of a Lake Tanganyika tributary with the upper Congo drainage suggested by genetic data of riverine cichlid fishes". African Zoology. 47(1):182-186. DOI: 10.3377/004.047.0115 (crc04566) (resumen)
Koblmüller, Stephan & E.A. Odhiambo, D. Sinyinza, C. Sturmbauer, K.M. Sefc. 2014. "Big fish, little divergence: phylogeography of Lake Tanganyika’s giant cichlid, Boulengerochromis microlepis". Hydrobiologia. (epub):1-10. DOI: 10.1007/s10750-014-1863-z (crc06212) (resumen)
Koblmüller, Stephan & B. Nevado, L. Makasa, M. Van Steenberge, M.P.M. Vanhove, E. Verheyen, C. Sturmbauer, K.M. Sefc. 2016. "Phylogeny and phylogeography of Altolamprologus: ancient introgression and recent divergence in a rock-dwelling Lake Tanganyika cichlid genus". Hydrobiologia. 791(1):35–50. DOI: 10.1007/s10750-016-2896-2 (crc07372) (resumen)
Koblmüller, Stephan & B. Nevado, L. Makasa, M. Van Steenberge, M.P.M. Vanhove, E. Verheyen, C. Sturmbauer, K.M. Sefc. 2017. "Phylogeny and phylogeography of Altolamprologus: ancient introgression and recent divergence in a rock-dwelling Lake Tanganyika cichlid genus". Hydrobiologia. 791(1):35–50. DOI: 10.1007/s10750-016-2896-2 (crc08192) (resumen)
Koblmüller, Stephan & R.C. Albertson, M.J. Genner, K.M. Sefc. 2017. "Preface: Advances in cichlid research II: behavior, ecology and evolutionary biology". Hydrobiologia. 791(1):1-6. DOI: 10.1007/s10750-017-3111-9 (crc08080)
Koblmüller, Stephan & L. Zangl, C. Börger, D. Dail, M. P. M. Vanhove, C. Sturmbauer, K. M. Sefc. 2018. "Only true pelagics mix: comparative phylogeography of deepwater bathybatine cichlids from Lake Tanganyika". Hydrobiologia. 1-11 epub. DOI: https://doi.org/10.1007/s10750-018-3752-3 (crc08954) (resumen)
Koblmüller, Stephan & L. Zangl, C. Börger, D. Daill, M.P.M. Vanhove, C. Sturmbauer, K.M. Sefc. 2018. "Only true pelagics mix: comparative phylogeography of deepwater bathybatine cichlids from Lake Tanganyika". Hydrobiologia. epub. DOI: 10.1007/s10750-018-3752-3 (crc09181) (resumen)
Koblmüller, Stephan & R. Craig Albertson, Martin J. Genner, Tetsumi Takahashi, Kristina M. Sefc. 2023. "Preface: advances in cichlid research V: behavior, ecology, and evolutionary biology". Hydrobiologia. DOI: 10.1007/s10750-023-05240-4 (crc12394) (resumen)